User: carol.brunel

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Posts by carol.brunel

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Comment: C: Custom model matrix for multi factordesign
... That you Michael, this helps a lot! ...
written 11 months ago by carol.brunel0
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Comment: C: Custom model matrix for multi factordesign
... Thank you Michael for your quick reply, Sorry, I may have been unclear; actually I consider individual (species) as a nuisance and origin is the level of interest. What I would like to observe is both the infection effect and the interaction between the infection and the origin. This is the reason ...
written 11 months ago by carol.brunel0
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Comment: C: Custom model matrix for multi factordesign
... For a reproductible example, please find the dataset and the script here: https://wetransfer.com/downloads/db45667b6d030720caa485fdfd9b459f20180927090701/983649e13f9e65d3ef3cadbcefc3874720180927090701/1be251 ...
written 11 months ago by carol.brunel0
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Comment: C: Custom model matrix for multi factordesign
... > sessionInfo() R version 3.5.0 (2018-04-23) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) Matrix products: default locale: [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252    [3] LC_MONETARY=English_United States.1252 LC ...
written 11 months ago by carol.brunel0
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Custom model matrix for multi factordesign
... Hi, I am trying to figure out what is the correct model formula and analysis approach is with DESeq2 for my multifactor design in a context of microbiome sequencing. What I have is 42 samples coming from rhizospheric soils from 7 different plant species (that are considered as invasive or native) a ...
deseq2 estimatesizefactors lrt model.matrix geometric mean written 11 months ago by carol.brunel0 • updated 11 months ago by Michael Love25k

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