User: idapantoja

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idapantoja0
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Posts by idapantoja

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Comment: C: DESeq2 for a 3-way interaction analysis?
... The whole experiment is divided in two parts. The first part was done with  volunteers randomized to one of the two diets (e.g MRE vs HAB, is the habitual diet). This part was for a period of 21 days. We had samples before starting with the diet consumption, defined as day 0, and samples after the c ...
written 5 months ago by idapantoja0
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Comment: C: DESeq2 for a 3-way interaction analysis?
... Natick.269 A 0 HAB 0 Natick.270 A 5 HAB 0 Natick.271 A 10 HAB 0 Natick.272 A 24 HAB 0 Natick.273 A 48 HAB 0 Natick.274 B 0 HAB 0 Natick.275 B 5 HAB 0 ...
written 5 months ago by idapantoja0
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Comment: C: DESeq2 for a 3-way interaction analysis?
... Hi Michael, Thanks for the quick response. Here the information of the coldata. As it is a lot of information, I will divide the table in 2 posts: index SubjectID Time Diet Date Natick.240 B 0 MRE 0 Natick.241 B 5 MRE 0 Natick ...
written 5 months ago by idapantoja0
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DESeq2 for a 3-way interaction analysis?
... Hi everyone! I have a question about the DEseq2 analysis. Can it be used to analyze a 3-way interaction? In my experiment, we have 3 variables: Diet + Date + Time, that need to be analyze together. Briefly, we had samples from subjects that had 2 different diets for a period of 21 days. After tha ...
deseq2 written 5 months ago by idapantoja0 • updated 5 months ago by Michael Love23k
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Comment: C: Error message for installing DESeq2
... Hi Martin, Thanks so much for your response. This is what I get when I do R.home(): > R.home() [1] "//natia7ndenas2/DPS/IDAG~1.PAN/DOCUME~1/R/R-35~1.1"   I am in a Government Computer and I am not sure if I am having some restrictions. When I did the go ...
written 6 months ago by idapantoja0
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Comment: C: Error message for installing DESeq2
... Look, I did the 'map network drive' and I am still getting that error I just posted. ...
written 6 months ago by idapantoja0
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Comment: C: Error message for installing DESeq2
... I did and I got this other error: > biocLite(c("GenomeInfoDb")) BioC_mirror: https://bioconductor.org Using Bioconductor 3.7 (BiocInstaller 1.30.0), R 3.5.1 (2018-07-02). Installing package(s) ‘GenomeInfoDb’ also installing the dependency ‘GenomeInfoDbData’ trying URL 'https://bioconductor.org ...
written 6 months ago by idapantoja0
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Comment: C: Error message for installing DESeq2
... Hi!! I am having this same problem you had. How you solved it? Thanks in advance!!! Ida ...
written 6 months ago by idapantoja0

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