User: chighfi

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chighfi0
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Posts by chighfi

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Comment: C: Averaging over biological replicates with DESeq2 for heatmap plotting
... Hi James,  I realize my code is not correct in the aspect of plotting the most significant DEGenes. I am very new to DEseq2 and making heat maps. In the end I want to generate a heat map for the "pulled" samples on only the most significant genes. In this case it was 104 genes.  ...
written 14 months ago by chighfi0
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Averaging over biological replicates with DESeq2 for heatmap plotting
... I have a question on averaging biological replicates together. the code below plots data for each sample. When and how do I combine my biological replicates for plotting? I would like to combine over the CONDITION column and have tried a man ways. Thought you might have an answer.  colData(rld) Da ...
deseq2 average pheatmap written 14 months ago by chighfi0 • updated 14 months ago by James W. MacDonald52k

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