User: pltbiotech_tkarthi

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Posts by pltbiotech_tkarthi

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How to extract genomic positions of SNPs using snp-sites or using any R package?
... By using snp-sites (https://github.com/sanger-pathogens/snp-sites) I extracted the SNPs with Linux command: snp-sites file name.fasta. This script just extracting the SNPs without position information. I know the genomic positions of my reference sequence. My question is: How to add the genomic posi ...
snps written 8 months ago by pltbiotech_tkarthi0
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How to extract SNPs from multiple alignment fasta file?
... I am using following scripts to read fasta files >library(Biostrings) >dna <- readDNAStringSet("<<PATH TO FASTA FILE>>") But, further I would like to extract SNPs from these alignment file, but I don't know how extract the SNPs. Does anyone know?   ...
snp fasta tutorial multiple sequence alignment written 14 months ago by pltbiotech_tkarthi0 • updated 14 months ago by Martin Morgan ♦♦ 24k

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