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Posts by pltbiotech_tkarthi
... By using snp-sites (https://github.com/sanger-pathogens/snp-sites) I extracted the SNPs with Linux command: snp-sites file name.fasta. This script just extracting the SNPs without position information. I know the genomic positions of my reference sequence. My question is: How to add the genomic posi ...
... I am using following scripts to read fasta files >library(Biostrings) >dna <- readDNAStringSet("<<PATH TO FASTA FILE>>") But, further I would like to extract SNPs from these alignment file, but I don't know how extract the SNPs. Does anyone know? ...
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