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answers
0
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0
replies
3.6k
views
Answer:
Answer: Pathview unable to download pathways
20 months ago
Luo Weijun
★ 1.6k
1
vote
1
reply
2.6k
views
Answer:
Answer: pathview says my nonmodel species is unknown: "species invalid"
20 months ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.1k
views
Answer:
Answer: pathview: unable to use option "out.suffix"
2.8 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.8k
views
Answer:
Answer: Drawing custom KEGG pathways
2.9 years ago
Luo Weijun
★ 1.6k
1
vote
1
reply
1.5k
views
Answer:
Answer: PATHVIEW incorrect values being plotted in output
3.0 years ago
Luo Weijun
★ 1.6k
3
votes
0
replies
1.5k
views
Answer:
Answer: KEGG analysis for plasmodium
3.1 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.1k
views
Answer:
Answer: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ S
3.2 years ago
Luo Weijun
★ 1.6k
1
vote
0
replies
928
views
Answer:
Answer: Which group is meant by greater oder less in the gage results?
3.4 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
818
views
Answer:
Answer: Change colors pathview
3.4 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.2k
views
Answer:
A: Creating gene set data for yeast
3.7 years ago
Luo Weijun
★ 1.6k
1
vote
1
reply
1.2k
views
Answer:
A: Creating gene set data for yeast
3.7 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
1.2k
views
Answer:
A: Issue with xml files downloaded with `pathview()`
4.8 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
3.0k
views
Answer:
A: KEGG enrichment for non-model
5.8 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.3k
views
Answer:
A: GAGE function and the same.dir option
5.9 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
3.7k
views
Answer:
A: Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad
6.2 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.6k
views
Answer:
A: Error when installing package gageData
6.2 years ago
Luo Weijun
★ 1.6k
1
vote
0
replies
1.4k
views
Answer:
A: Highlight ECs by KEGG module
6.4 years ago
Luo Weijun
★ 1.6k
1
vote
0
replies
2.4k
views
Answer:
A: Error in Pathview parsing: "Parsing ./ko00195.xml file failed, please check the
6.5 years ago
Luo Weijun
★ 1.6k
2
votes
0
replies
1.7k
views
Answer:
A: GAGE after tximport
6.5 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.6k
views
Answer:
A: GAGE: No significant output while it should have
6.6 years ago
Luo Weijun
★ 1.6k
1
vote
1
reply
2.2k
views
Answer:
A: Using GAGE to Analyze Pathway Enrichment Directly from Fold Change Data
6.6 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
2.3k
views
Answer:
A: Pathview -- Error in korg[ridx, coln] : subscript out of bounds
6.6 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
2.3k
views
Answer:
A: Pathview -- Error in korg[ridx, coln] : subscript out of bounds
6.6 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
4.5k
views
Answer:
A: Recent build and parsing error in pathview
6.8 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
4.5k
views
Answer:
A: Recent build and parsing error in pathview
6.8 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.3k
views
Answer:
A: Multiple samples on the same graph
6.8 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
4.5k
views
Answer:
A: Recent build and parsing error in pathview
6.8 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
2.6k
views
Answer:
A: Error in pathview - came out of nowhere without any source code modification
6.9 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
2.6k
views
Answer:
A: Error in pathview - came out of nowhere without any source code modification
6.9 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.2k
views
Answer:
A: GAGE: no essential member genes for some DE pathways
7.0 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.5k
views
Answer:
A: ID unmatched in pathview
7.0 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
2.1k
views
Answer:
A: error when rendering pathway with pathview package
7.0 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.9k
views
Answer:
A: GAGE or GSEABase using expression data and pathway.gmt file for mouse
7.0 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
2.0k
views
Answer:
A: Pathview: visualization of data
7.1 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
2.2k
views
Answer:
A: Pathview pathview kegg.native=TRUE throws error in img
7.2 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.8k
views
Answer:
A: Can edgeR be used on GO terms?
7.2 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
2.0k
views
Answer:
A: Error: Pathway analysis using Sleuth results
7.3 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
1.6k
views
Answer:
A: GAGE and Pathview from RNA-Seq: 'ref.idx' and 'samp.idx' when no replicates
7.4 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
2.3k
views
Answer:
A: GO slim data for GAGE GSEA analysis
7.5 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
1.6k
views
Answer:
A: How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow
7.5 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
2.1k
views
Answer:
A: Gene Ontology and Gene Set Enrichment
7.6 years ago
Luo Weijun
★ 1.6k
1
vote
0
replies
2.8k
views
Answer:
A: Pathview color code and gene homolog handling?
7.6 years ago
Luo Weijun
★ 1.6k
1
vote
0
replies
2.3k
views
Answer:
A: GO slim data for GAGE GSEA analysis
7.7 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.8k
views
Answer:
A: Pathview & topGO
7.7 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
1.4k
views
Answer:
A: Pathview: Exporting non native KEGG pathway ignoring same.layer argument
7.7 years ago
Luo Weijun
★ 1.6k
2
votes
1
reply
2.0k
views
Answer:
A: Pathview: Exporting non native KEGG pathway to PNG
7.7 years ago
Luo Weijun
★ 1.6k
1
vote
0
replies
1.9k
views
Answer:
A: Using pathview with uncommon species leads to Errors
7.8 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
1.5k
views
Answer:
A: DESeq2 rlog as input for GAGE
7.8 years ago
Luo Weijun
★ 1.6k
2
votes
1
reply
3.0k
views
Answer:
A: Why Pathview shows just red color (up-regulated genes) on a pathway?
7.8 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
3.5k
views
Answer:
A: Error in using Pathview package. Do not print the pathways provided by GAGE anal
7.9 years ago
Luo Weijun
★ 1.6k
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