User: YinCY

gravatar for YinCY
YinCY10
Reputation:
10
Status:
New User
Location:
HangZhou, zhejaing
Last seen:
1 month, 1 week ago
Joined:
10 months ago
Email:
y*************@163.com

Posts by YinCY

<prev • 7 results • page 1 of 1 • next >
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Answer: A: Error in getBM
... Try use useEnsembl() function instead of useMart() which can choose different mirror, that you can choose the one that closest to you. useEnsembl(mirror = c("eastusa", "westusa", "asia")) ...
written 5 weeks ago by YinCY10
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Comment: C: Hello ! does anybody failed to convert id using getBM in biomaRt package?
... thanks Mike!! this is very helpful and the speed is improved much more. ...
written 9 weeks ago by YinCY10
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Hello ! does anybody failed to convert id using getBM in biomaRt package?
... when i do id convertion using getBM() function from biomaRt bioconductor package, from time to time this problem comes up, sometimes decrease the attributes can solve, but sometimes not. is there are any solutions? ``` > gencode.1 <- getBM( + attributes = c("ensembl_gene_id", "ensembl_tran ...
biomart getbm written 9 weeks ago by YinCY10 • updated 9 weeks ago by James W. MacDonald50k
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Comment: C: convert featureCounts's gene ID to entrez gene id
... Thank you for your generous help! I'm using gencode annotation file because the author recommended. thanks again! ...
written 10 months ago by YinCY10
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Comment: C: convert featureCounts's gene ID to entrez gene id
... it's very helpful! thanks Gordon. ...
written 10 months ago by YinCY10
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Comment: C: convert featureCounts's gene ID to entrez gene id
... ok, thanks. ...
written 10 months ago by YinCY10
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convert featureCounts's gene ID to entrez gene id
... I'm using featureCounts (from Rsubread R/Bioconductor package) and gencode annotation file to do features sumarization, but the gene ids are as below, how can i convert those  ID to entrez gene ids. [1] "ENSMUSG00000102693.1" "ENSMUSG00000064842.1" "ENSMUSG00000051951.5" [4] "ENSMUSG00000102851.1" ...
biomart rsubread gencode written 10 months ago by YinCY10 • updated 10 months ago by James W. MacDonald50k

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