User: gingergeiger22

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Posts by gingergeiger22

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Comment: C: Modify Biostrings script
... Thank you very much for your responses. I have not yet tried this approach because I am playing around with retrieving intact reads specific to a genomic range from my indexed BAM file using the Rsamtools and GenomiRanges packages. However, it seems that most of the Bioconductor tools that analyze t ...
written 5 months ago by gingergeiger220
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Comment: C: Modify Biostrings script
... Yes, I need 15 nucleotides from the 3' end to remain in any case. That solution is easier. That will work- is that what this does? Thanks!   ...
written 5 months ago by gingergeiger220
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Modify Biostrings script
... I am using the Biostrings package in R to translate my NGS reads directly to amino acids. It has been great so far in my analysis, but I need to modify it for a part of the analysis. I am using a conserved genomic site to begin translating reads in the forward direction from the 5' end. However, if ...
biostrings modify translate written 5 months ago by gingergeiger220 • updated 5 months ago by Hervé Pagès ♦♦ 13k

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