User: michaelschoeber

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New User
Location:
Austria/Vienna/CCRI
Last seen:
6 months, 2 weeks ago
Joined:
6 months, 4 weeks ago
Email:
m**************@hotmail.com

Master Student at the Children's Cancer Research Institute, Vienna

Posts by michaelschoeber

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Comment: C: R failing to load genome files from EnsDb.Hsapiens.v86
... > dir(system.file("extdata", package = "EnsDb.Hsapiens.v86")) character(0) I think this is more of an installation problem than anything. I will try to reinstall R. Thank you for your help so far! ...
written 6 months ago by michaelschoeber10
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Comment: C: R failing to load genome files from EnsDb.Hsapiens.v86
... In that case the output is  > library(EnsDb.Hsapiens.v86) > ls('package:EnsDb.Hsapiens.v86') character(0) > ...
written 6 months ago by michaelschoeber10
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Comment: C: R failing to load genome files from EnsDb.Hsapiens.v86
... I tried  library(EnsDb.Hsapiens.v86) edb <- EnsDb.Hsapiens.v86 Tx <- transcripts(edb) sessionInfo()   The console output is as following: > library(EnsDb.Hsapiens.v86) > > edb <- EnsDb.Hsapiens.v86 Error: object 'EnsDb.Hsapiens.v86' not found > Tx <- transcripts(ed ...
written 6 months ago by michaelschoeber10
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R failing to load genome files from EnsDb.Hsapiens.v86
... Hi,  I would like to construct a tx2gene data frame for summarizing transcript expression to gene level expression via tximport.  I did not get any errors when installing the "ensembldb" or the "EnsDb.Hsapiens.v86" packages as far as I noticed, I can also load them normally via the library functio ...
ensembldb tximport ensdb.hsapiens.v86 written 6 months ago by michaelschoeber10 • updated 5 months ago by Bioconductor Community ♦♦ 0

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