User: jgg

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jgg0
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Posts by jgg

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Comment: C: topGO: GO terms in gene annotation do not match significant GO term output
... Great! That explains it, thanks. ...
written 9 months ago by jgg0
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Comment: C: topGO: GO terms in gene annotation do not match significant GO term output
... I think that is probably the issue here, but I just wanted to make sure as I'm guessing other people might have had the same problem. Unfortunately, I cannot check that this is the case for all l GOterms and genes in my list.  Thanks for your reply! Joana ...
written 9 months ago by jgg0
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Comment: C: topGO: GO terms in gene annotation do not match significant GO term output
... Sorry about that!! Here is the example code for the output I mentioned. Does it make more sense now? Thanks a lot for your help, Joana     #################################################################### library(topGO) # Input files and gene IDs and background annotation with Sma3s format ...
written 9 months ago by jgg0
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topGO: GO terms in gene annotation do not match significant GO term output
... Hi! I'm having trouble establishing a comparison between GO terms in the original annotation of the gene subset chosen for enrichment and significant GO terms in the GenTable output of topGO When I retrieve the gene IDs annotated with each GO term using genesInTerm(), their original annotation doe ...
rnaseq topgo go enrichment written 9 months ago by jgg0 • updated 9 months ago by James W. MacDonald51k

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