User: Helene

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Helene0
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Posts by Helene

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Diffbind plotting options
... Hello, I am working with data set that has 29 different samples with 9 different conditions (all in Condition column), for a total of 28 contrasts (conditions have 1 to 4 samples). I am trying to make a PCA plot that shows all samples, but only uses the peaks that are differentially bound in contr ...
diffbind written 11 weeks ago by Helene0 • updated 9 weeks ago by Rory Stark2.8k
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Comment: C: DeSeq2 with extremely variable samples
... Hi Dr. Love - thanks so much for the prompt reply. I will update DESeq2 and try again. Among all the methods you mentioned, would you recommend the subset-to-two-groups approach? I personally like to hold the complete table together, but I guess in theory it should not matter.  ...
written 5 months ago by Helene0
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DeSeq2 with extremely variable samples
... Hello all, I am writing to learn how to set up DESeq2 when my samples have large variation in gene counts. For example below is one row from my gene count table. Samples a b c d e f g h i j k l m n o p q r s t u v w x ...
deseq2 written 5 months ago by Helene0 • updated 5 months ago by Michael Love23k

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