User: bertb

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bertb0
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Posts by bertb

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Unable to annotate in ChIPQC using yeast genome
... Hello, I am trying to do a ChIPQC analysis, but it appears that annotations for Saccharomyces Cerevisiae are not supported: ``` > library(ChIPQC) > samples = read.csv("sample.sheet.csv") > CQCanalysis = ChIPQC(samples, annotation="sacCer3") swn1 WT none 1 macs swn2 WT none 2 macs swh ...
chippeakanno genomicranges chipqc written 7 months ago by bertb0
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Comment: C: Gviz unable to retrieve cytoband data for sacCer3 when trying to create ideogram
... Ok. Thanks Robert. Ben ...
written 7 months ago by bertb0
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Comment: C: Gviz unable to retrieve cytoband data for sacCer3 when trying to create ideogram
... Thanks for your response, Robert. You're right, I'm able to continue to plot a track, but I was hoping to include an ideogram that represented sacCer3. Perhaps there is simply no data available for sacCer3. ...
written 7 months ago by bertb0
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Gviz unable to retrieve cytoband data for sacCer3 when trying to create ideogram
... Hello, I'm trying to create an ideogram track in Gviz, but I receive the following error message that seems to have an issue with my chosen genome: ''' > ideogram <- IdeogramTrack("chrIX", "sacCer3") Warning message: In value[[3L]](cond) : There doesn't seem to be any cytoband data availa ...
annotation gviz software error written 7 months ago by bertb0 • updated 7 months ago by Robert Ivanek660

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