User: juditkovacsbio

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Posts by juditkovacsbio

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Comment: C: Timecourse gene expression analysis with DESeq2
... Dear Michael, thank you for your help. I went through on your suggested pages and check other comments from Bioconductor. I re-arranged my script: ddsHTSeq <- DESeqDataSetFromHTSeqCount(sampleTable = sampleTable, directory = directory, ...
written 11 months ago by juditkovacsbio0
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Comment: C: Timecourse gene expression analysis with DESeq2
... Yes, I tried to follow some of those (e.g. I followed this link: http://bioconductor.org/packages/devel/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html#time-course-experiments and this: https://support.bioconductor.org/p/65676/#66860) What I didn't get that if I use res <- results(dds, ...
written 11 months ago by juditkovacsbio0
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Timecourse gene expression analysis with DESeq2
...   Dear all, I'm doing timecourse RNAseq analysis. I'm quite new with R and I would have question concerning DESeqDataSetFromHTSeqCount(...,design=...) and later DESeq(... test= "LRT", reduced = ...) and using results() with Wald test. I have treated (APO) /untreated (DMSO) sample and 6 timepoin ...
timecourse deseq2 multiple factor design lrt written 11 months ago by juditkovacsbio0 • updated 11 months ago by Michael Love26k

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