User: Manhong Dai

gravatar for Manhong Dai
Manhong Dai200
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Posts by Manhong Dai

<prev • 20 results • page 1 of 2 • next >
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Custom cdf 14.1.0 is released
... Dear all, We upgraded our Custom CDF R packages to 14.1.0. They are built with the newly released R 2.13, Bioconductor 2.8. We also changed our Repository and Bioconductor now points to the new packages. We want to thank Marc Carlson for his help. We gratefully acknowle ...
cdf written 8.0 years ago by Manhong Dai200
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Custom CDF Version 14 is released
... Dear Bioconductor Subscriber, Just so you know that we released Custom CDF version 14 at http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF _download.asp#v14 Our brainarray BioC repository is updated too. In this version, tiling chips are discontinued because ...
cdf written 8.1 years ago by Manhong Dai200
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custom CDF version 12.1.0 is released
... Hi, Custom cdf R package version 12.0.0 is upgraded to 12.1.0. It is compatible with R 2.10.z and Bioc 2.5 now. Best, Manhong ...
cdf written 9.4 years ago by Manhong Dai200 • updated 9.4 years ago by Groot, Philip de630
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Answer: A: Custom CDF Version 12 is released
... Hi Yair, Thanks a lot for telling me this glitch. I temporarily disabled Mac Repository. It seems that I better stop supporting Mac Binary version because I actually don't have a Mac machine to test them. Mac users can install it from source packages anyway. I will ask for sugges ...
written 9.7 years ago by Manhong Dai200
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Custom CDF Version 12 is released
... Hi, We just release Custom CDF Version 12 officially. All files are available at http://brainarray.mbni.med.umich.ed u/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp. All R packages are also in our own R repository. You should be able to use biocLite() to install them, jus ...
snp cdf written 9.7 years ago by Manhong Dai200
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Answer: A: ragene10st
... Hi Sebastien, I CCed this email to bioc because actually this question is very common question for new custom CDF users. Our custom CDF doesn't use Affy's original probeset ID, instead, we only use individual probe, and organize them into meaningful probeset. Probeset in custom C ...
written 10.1 years ago by Manhong Dai200
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Answer: A: ragene10st
... Hi Sebastien, Custom CDF version 11 is at http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF _download.asp#v11 If you prefer entrez gene based cdf, it is at http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/11. 0.1/entrezg.asp then search RaGen ...
written 10.1 years ago by Manhong Dai200
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Answer: A: Cannot find MoGene-1.0
... Hi Peter, This chip is supported in Custom CDF version 11, you can google 'custom cdf' for detail. Best, Manhong > Date: Sun, 01 Mar 2009 11:14:50 +0100 > From: Peter Robinson > Subject: [BioC] Cannot find MoGene-1.0 > To: Bioconductor at stat.math.ethz.ch > Message-ID: & ...
written 10.2 years ago by Manhong Dai200
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ragene10st
... Hi Sebastien, I saw that Marc is helping you with ragene10st's annotation package. This is a way to go. Another way to analyze this chip is our Custom CDF. You can google 'custom cdf' for details. Best, Manhong ...
go cdf written 10.2 years ago by Manhong Dai200
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MBNI Custom CDF Announcement
... Dear Bioconductor users, Since version 11, the MBNI (Molecular & Behavioral Neuroscience Institute, University of Michigan) Custom CDF repository is added into Bioconductor. Therefore, Bioconductor user can use biocLite() to install those R packages, while the traditional Download/R CMD INSTAL ...
cdf probe vega written 10.2 years ago by Manhong Dai200

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