User: rm1238

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rm12380
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Posts by rm1238

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Clusterprofiler error, No gene can be mapped
... Hello, I am having an error when I try to use clusterprofiler enricher feature for MsigDB analysis of a list of genes. I have been following the code here: https://yulab-smu.github.io/clusterProfiler-book/chapter3.html#msigdb-analysis Below the code I have used to generate the geneList. > gen ...
microarray clusterprofiler written 6 weeks ago by rm12380
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Comment: C: Design matrix choice for time series experiment using limma
... Hello Aaron, Thank you for your detailed answer. Indeed, the batches are three different biological replicates of the same experiment. I will be working on your suggestions.   Thank you again ...
written 4 months ago by rm12380
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Design matrix choice for time series experiment using limma
... Hello, I have performed time-series experiments (3 biological replicates) in human cells. We want to identify differentially regulated genes at any time point relative to the T0 time point. I am using splines to model the data (using scripts developed by a former colleague). >My present design ...
limma help time series written 4 months ago by rm12380 • updated 4 months ago by Aaron Lun23k

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