Reputation:
0
Status:
New User
Last seen:
6 months, 3 weeks ago
Joined:
10 months ago
Email:
s*************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

<prev • 29 results • page 1 of 3 • next >
1
212
views
1
... Thank you for helping me on this issue. ...
written 7 months ago by saddamhusain770
1
212
views
1
...  > dim(countsgenco) [1] 174318 6  The row names of countgenco is feature_id as you could notice above. Countsgenco is nothing but the counts and ctsgenco is cts; I have just added "genco" acronym. It might be relevant to ask, since I have run the code beyond this point just to see ho ...
written 7 months ago by saddamhusain770
1
212
views
1
... I am sorry to bother you again but the dmDSdata output does'nt look like what is there in the vignettes. It shows just 1 genes.  > all(rownames(ctsgenco) %in% txdfgenco$TXNAME) [1] TRUE > txdfgenco <- txdfgenco[match(rownames(ctsgenco),txdfgenco$TXNAME),] > all(rownames(ctsgenco) ...
written 7 months ago by saddamhusain770
1
212
views
1
written 7 months ago by saddamhusain770
1
212
views
1
... The gene symbol and description. Please tell me if I have used the function properly as I am getting following output.  > chop1 <-function(x) { + sub("\\|.*","",x) + } > ctsgenco4 <- chop1(ctsgenco) > head(ctsgenco4) [1] "0.630859660016231" "0" "28.3130 ...
written 7 months ago by saddamhusain770
1
212
views
1
... Thank you Michael. I have just corrected my post and have added entire code I am using. ...
written 7 months ago by saddamhusain770
1
212
views
1
... HI, I am analysing differential transcript usage on rna seq data and I am stuck at this point- It seems to me that issue is in the ctsgenco object where a single row contains multiple transcript ids but dont know how to correct it. ` > filesgenco <- list.files( pattern = ".txt",full.names = ...
written 7 months ago by saddamhusain770
1
209
views
1
... Thanks again kristoffer for all the inputs and the support. I will try with genecode annotation. The issue I find with the annotation files is that no two annotation system replicate the results and I have some worrisome data generated using gencode, ensemble and ucsc gtf files and I found signific ...
written 7 months ago by saddamhusain770
1
209
views
1
... Thank you Kristoffer for the clarification. Well, I uploaded knowngene file from ucsc table browser to the galaxy and then downloaded it some 4-5 months ago, so I don't know whether they have updated it recently. Please forward me the link from where you downloaded the file, I am having hard time fi ...
written 7 months ago by saddamhusain770
1
209
views
1
... I tried with 1.5.6 and got the same error. ...
written 7 months ago by saddamhusain770