User: Ingrid H. G. Østensen

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Posts by Ingrid H. G. Østensen

<prev • 69 results • page 1 of 7 • next >
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Lumi: GenomStudio vs BeadStudio
... Hi I am using lumi to analyze my Illumina data. Previously I have used BeadStudio but we have now gotten GenomeStudio. When I am using lumiR to read in my data file I get a warning/error message telling me that the data might not be BeadStudio output. I still have BeadStudio and the same data fr ...
go lumi written 8.5 years ago by Ingrid H. G. Østensen690
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Inf when using duplicateCorrelation - now with session info
... Hi I am trying to analyze a data set consisting of data run on two different times a few months a part. The data set consists of 8 groups with 3 biological replicates in each, and Illumina Human WG6 v3 arrays have been used. I am using the probe profile file in the analysis. After the quality c ...
go probe written 8.8 years ago by Ingrid H. G. Østensen690
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Inf when using duplicateCorrelation
... Hi I am trying to analyze a data set consisting of data run on two different times a few months a part. The data set consists of 8 groups with 3 biological replicates in each, and Illumina Human WG6 v3 arrays have been used. I am using the probe profile file in the analysis. After the quality c ...
probe written 8.8 years ago by Ingrid H. G. Østensen690
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Limma: What to choose?
... Hi I have some data that I am going to analyze, but I have some problems regarding what to choose/do. The dataset consists of 4 treatments groups: NG, NG+benfo, HG and HG+benfo and it has been used samples from 3 donors in each group: donor 29, 30 and 34. This means that it is 4 groups consisting ...
clustering limma written 9.2 years ago by Ingrid H. G. Østensen690 • updated 9.2 years ago by James W. MacDonald45k
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Questions regarding lumi
... Hi I have two questions regarding the lumi package: If I use lumiR and the parameter checkDupId=FALSE I do not get the probeID when I extract the expression data using exprs. If checkDupId=TRUE the probeID is extracted together with the expression data. Any explanation why this parameter, checkD ...
lumi written 9.2 years ago by Ingrid H. G. Østensen690
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Illumina HumanWG6 vs. HumanHT-12
... Hi We are considering switching from HumanWG6 to HumanHT-12. Unfortunately Illumina does not have any test data I can use to test our pipeline in R/Bioconductor, and switching without any information/experience is not always successful. Has anyone used/tested this array? (Which packages and annota ...
annotation written 9.4 years ago by Ingrid H. G. Østensen690
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Illumina annotation human v3
... Hi Does any one have annotation packages for Illumina Human WG6 version 3 that works on Windows? Regards, Ingrid [[alternative HTML version deleted]] ...
annotation written 9.6 years ago by Ingrid H. G. Østensen690 • updated 9.6 years ago by Marc Carlson7.2k
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Answer: A: Problems making contrasts
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written 9.8 years ago by Ingrid H. G. Østensen690
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Problems making contrasts
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written 9.8 years ago by Ingrid H. G. Østensen690
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graph showing the GO results
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written 9.9 years ago by Ingrid H. G. Østensen690

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