User: mscherer

gravatar for mscherer
mscherer10
Reputation:
10
Status:
New User
Location:
Last seen:
2 weeks, 1 day ago
Joined:
4 months, 3 weeks ago
Email:
m*******@mpi-inf.mpg.de

Posts by mscherer

<prev • 3 results • page 1 of 1 • next >
1
vote
1
answer
43
views
1
answers
Answer: A: Obtaining annotated results from rnbeads
... Dear Mark, That is easily solved. The obtained results have the same dimension as the methylation and annotation matrices stored in the ```rnb.set``` object. You can access this information using: anno.genes <- annotation(rnb.set,"genes") anno.proms <- annotation(rnb.set,"promoters") ...
written 15 days ago by mscherer10
0
votes
1
answer
99
views
1
answers
Comment: C: Trouble creating an RnBeads annotation for rn6 rat genome build
... Hey Richard, The maxSNPs parameter is used as the maximum batch size. So if you have more SNPs than this number, RnBeads suggests to use a compute cluster for that. This is the case you are in. RnBeads automatically creates a script that you can use for job scheduling with PBS. In your case, it is ...
written 4 months ago by mscherer10
0
votes
1
answer
99
views
1
answers
Answer: A: Trouble creating an RnBeads annotation for rn6 rat genome build
... Hey Richard, I just had a look into the code for the annotation creator and found the following function definition: createAnnotationPackage <- function(assembly,dest=getwd(),maxSNPs=500000L,cleanUp=TRUE) The parameter *maxSNPs* accounts for the maximal number of SNPs allowed in any given ...
written 4 months ago by mscherer10

Latest awards to mscherer

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 177 users visited in the last hour