User: mscherer

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mscherer0
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Posts by mscherer

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Comment: C: Trouble creating an RnBeads annotation for rn6 rat genome build
... Hey Richard, The maxSNPs parameter is used as the maximum batch size. So if you have more SNPs than this number, RnBeads suggests to use a compute cluster for that. This is the case you are in. RnBeads automatically creates a script that you can use for job scheduling with PBS. In your case, it is ...
written 10 weeks ago by mscherer0
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Answer: A: Trouble creating an RnBeads annotation for rn6 rat genome build
... Hey Richard, I just had a look into the code for the annotation creator and found the following function definition: createAnnotationPackage <- function(assembly,dest=getwd(),maxSNPs=500000L,cleanUp=TRUE) The parameter *maxSNPs* accounts for the maximal number of SNPs allowed in any given ...
written 10 weeks ago by mscherer0

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