## User: mscherer

mscherer10
Reputation:
10
Status:
New User
Location:
Last seen:
2 weeks, 1 day ago
Joined:
4 months, 3 weeks ago
Email:
m*******@mpi-inf.mpg.de

#### Posts by mscherer

<prev • 3 results • page 1 of 1 • next >
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... Dear Mark, That is easily solved. The obtained results have the same dimension as the methylation and annotation matrices stored in the rnb.set object. You can access this information using: anno.genes <- annotation(rnb.set,"genes") anno.proms <- annotation(rnb.set,"promoters") ...
written 15 days ago by mscherer10
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... Hey Richard, The maxSNPs parameter is used as the maximum batch size. So if you have more SNPs than this number, RnBeads suggests to use a compute cluster for that. This is the case you are in. RnBeads automatically creates a script that you can use for job scheduling with PBS. In your case, it is ...
written 4 months ago by mscherer10
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... Hey Richard, I just had a look into the code for the annotation creator and found the following function definition: createAnnotationPackage <- function(assembly,dest=getwd(),maxSNPs=500000L,cleanUp=TRUE) The parameter *maxSNPs* accounts for the maximal number of SNPs allowed in any given ...
written 4 months ago by mscherer10

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