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Posts by mscherer
... Hey Richard, The maxSNPs parameter is used as the maximum batch size. So if you have more SNPs than this number, RnBeads suggests to use a compute cluster for that. This is the case you are in. RnBeads automatically creates a script that you can use for job scheduling with PBS. In your case, it is ...
... Hey Richard, I just had a look into the code for the annotation creator and found the following function definition: createAnnotationPackage <- function(assembly,dest=getwd(),maxSNPs=500000L,cleanUp=TRUE) The parameter *maxSNPs* accounts for the maximal number of SNPs allowed in any given ...
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