The support.bioconductor.org editor has been updated to markdown! Please see more info at: Tutorial: Updated Support Site Editor

User: sharmila.ahmad

Reputation:
0
Status:
New User
Last seen:
3 days, 1 hour ago
Joined:
2 weeks, 2 days ago
Email:
s*************@sund.ku.dk

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by sharmila.ahmad

<prev • 7 results • page 1 of 1 • next >
0
votes
1
answer
44
views
1
answers
Comment: C: Summary results interpretation in DeSeq2
... Hi Michael, I have another few questions to ask; 1) regarding filtering the low gene counts and outliers using NOISeq before running the DESeq. It is necessary or recommended to do that? If yes, does it makes any difference since the DESeq itself will filter the outliers and low counts genes righ ...
written 3 days ago by sharmila.ahmad0
0
votes
1
answer
44
views
1
answers
Comment: C: Summary results interpretation in DeSeq2
... Thank you for your explanation. Best, Mila ...
written 6 days ago by sharmila.ahmad0
0
votes
1
answer
44
views
1
answer
Summary results interpretation in DeSeq2
... Hi and good day, Can anyone explain to me what should I do if got the following results after running DeSeq? What should I do with the outliers and low counts? I have had filtered the low count <5 before running the analysis. ### result for Sex (F as reference level) res_Sex <-result ...
deseq2 written 7 days ago by sharmila.ahmad0 • updated 6 days ago by Michael Love22k
0
votes
1
answer
61
views
1
answers
Comment: C: Error in checkFullRank(modelMatrix) :
... Thank you again for your reply. I completely agree with you that I should design the model based on the specific biological approach. What I did for now is combining the two factors (Ewed & Lambd) as a group and used it in the design = ~ group + Sex ...
written 14 days ago by sharmila.ahmad0
0
votes
1
answer
61
views
1
answer
Error in checkFullRank(modelMatrix) :
... Hi, I am currently trying to run a deferential gene expression analysis to determine the the impact of Ewed (maternal diet) , Lambd (offspring diet) and sex (gender) on the mRNA expression of perirenal fat (per). My experimental design, therefore is three way interactions (Ewed: Lambd: Sex) and I wo ...
deseq2 written 15 days ago by sharmila.ahmad0 • updated 14 days ago by Michael Love22k
0
votes
1
answer
55
views
1
answers
Comment: A: How to create 3 way interactions model for Deseq
... Hi Micheal, Thank you for your feedback. I have tried to consult with someone that have knowledge in this matter but could not find any solution to that (for now) I have also tried to run this following model matrix but got error design <- model.matrix(~ -1 + per$Lambbw6 + per$Birthw + per$L ...
written 16 days ago by sharmila.ahmad0
1
vote
1
answer
55
views
1
answer
How to create 3 way interactions model for Deseq
... Hi good day, This is my first time working on differential gene expression analysis using DeSeq2. I am having a problem to construct my model matrix for DeSeq2 since I have a very complex experimental design (3 factors design) with the following information; ID Ewed Lambd Sex 1768 HIGH CONV M 1774 ...
deseq2 written 16 days ago by sharmila.ahmad0

Latest awards to sharmila.ahmad

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 377 users visited in the last hour