User: Nicola

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Nicola0
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Posts by Nicola

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Comment: C: DESeq2: RNA-Seq time series analysis after removal of batch effect
... Thanks a lot for your kind help! ...
written 4 weeks ago by Nicola0
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DESeq2: RNA-Seq time series analysis after removal of batch effect
... Hi, I'm trying to use DESeq2 to perform time series analysis like a one-way ANOVA on multi-groups of samples,but there is a obvious batch effect in my data . I would like to generate a single p-value that indicates difference among the time without batch effect. and this is my coldata: - List ...
deseq2 time series remove batch effect written 4 weeks ago by Nicola0
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Comment: C: deseq2 remove batch effect and one-way anova at one time
... > dds <- DESeqDataSetFromMatrix(countData = Data, colData, design= ~batch+condition) > dds = DESeq(dds, test = "LRT", reduced = ~ 1+batch) estimating size factors estimating dispersions gene-wise dispersion estimates mean-dispersion relationship final dispersion estimates fitting model a ...
written 4 weeks ago by Nicola0

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