User: Jorrit Boekel

gravatar for Jorrit Boekel
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Last seen:
10 years, 1 month ago
Joined:
12 years, 4 months ago
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j************@ki.se

Posts by Jorrit Boekel

<prev • 3 results • page 1 of 1 • next >
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limma and 2-array divided probe sets
... Dear list, I would like to do an analysis on a published dataset that used the "previous generation" (quote Affy) arrays Mu11K. These contain ~11K probes divided over 2 chips, give rise to 2 cel files, and use different annotation packages. As I am no limma-veteran, I wondered if there was a way t ...
limma written 10.1 years ago by Jorrit Boekel30 • updated 10.1 years ago by Wolfgang Huber13k
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biomaRt difference from biomart.org?
... Dear list, I have tried to fetch 1000bp upstream sequences for a number of rat genes via biomart. When using the webbased biomart this seems to work alright, but when automating the process I ran into a problem: for some genes, "Sequence unavailable" is returned. Exemplifiyng for a single gene tha ...
process biomart written 10.4 years ago by Jorrit Boekel30 • updated 10.4 years ago by Rhoda Kinsella660
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goTools problem
... Dear all, I want to use goTools to show gene ontologies of my two-color array data, which contains Rat Operon IDs (V3.0). My output is however the following: >ontoCompare(testid4, probeType="operon", plot=TRUE) [1] "Starting ontoCompare..." [1] 60160 2 [1] "Number of lists = 1" Error in as. ...
gotools oligo written 12.4 years ago by Jorrit Boekel30 • updated 12.4 years ago by Paquet, Agnes500

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