User: Alessandro Bruselles

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Posts by Alessandro Bruselles

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Comment: C: RMySQL, for loop problem...
... This latter solution from Sean finally worked... Thanks to all _________________________________________ Alessandro Bruselles University of Rome "Tor Vergata" ** Sean Davis ha scritto: > Alessandro Bruselles wrote: > >> This is the object I want to read from: >> > geni_FClow ...
written 12.3 years ago by Alessandro Bruselles100
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Comment: C: RMySQL, for loop problem...
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20070618/ 947e50ca/attachment.pl ...
written 12.3 years ago by Alessandro Bruselles100
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Comment: C: RMySQL, for loop problem...
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20070618/ c062b211/attachment.pl ...
written 12.3 years ago by Alessandro Bruselles100
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RMySQL, for loop problem...
... I'm trying to do a little loop using the RMySQL package to update some fields in my db but I can't find a way; the loop should be this: /for (i in 1:nrow(geni_FClow)){ dbGetQuery(con, "update GO_DC5_vs_50PC3_apoptosis set FC_low = geni_FClow$FC_low[i] where geni like geni_FClow$geni[i]") }/ but ...
written 12.3 years ago by Alessandro Bruselles100 • updated 12.3 years ago by Peter Sørensen (HAG)60
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Problem using useMart with local DB
... Hi, I'm trying to use Biomart with a local version of db: ensembl_mart_44; Since a week ago, before upgrading to R 2.5 and bioconductor 1.10, I was using the command: /ensembl=useMart("ensembl_mart_44", dataset="hsapiens_gene_ensembl", host="localhost", user="*****", password="******", local = TRUE, ...
biomart written 12.3 years ago by Alessandro Bruselles100 • updated 12.3 years ago by Steffen Durinck580
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how to use ontoCompare on local db.
... Hi, I'm wondering if it exists a way to use ontoCompare on a local install of the GO database, because the on-line query takes too much time... Thanks -- _________________________________________ Alessandro Bruselles University of Rome "Tor Vergata" Address: Via della Ricerca Scientifica - 00133 ...
go written 12.6 years ago by Alessandro Bruselles100
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Using ontoCompare with local GO database
... Hi, Does anyone now if and (if yes) how can I use goTools, in particular ontoCompare with a local install of the GO database? Thanks -- _________________________________________ Alessandro Bruselles University of Rome "Tor Vergata" Address: Via della Ricerca Scientifica - 00133 Rome - Italy e-mai ...
go gotools written 12.7 years ago by Alessandro Bruselles100 • updated 12.7 years ago by Paquet, Agnes500
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Answer: A: Problem using biomaRt with local database
... > Alessandro Bruselles writes: Hi, I'm having some problems when trying to use biomaRt with a local install database; I've downloaded and installed locally the ensembl biomart database version ensembl_mart_42, (ftp://ftp.ensembl.org/pub/release-42/mart_42/data/mysql/ensembl_mart _42) I c ...
written 12.7 years ago by Alessandro Bruselles100
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Answer: A: Problem using biomaRt with local database
... > Alessandro Bruselles writes: Hi, I'm having some problems when trying to use biomaRt with a local install database; I've downloaded and installed locally the ensembl biomart database version ensembl_mart_42, (ftp://ftp.ensembl.org/pub/release-42/mart_42/data/mysql/ensembl_mart _42) I c ...
written 12.7 years ago by Alessandro Bruselles100
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Problem using biomaRt with local database
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20070112/ 36539926/attachment.pl ...
written 12.7 years ago by Alessandro Bruselles100

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Popular Question 12.3 years ago, created a question with more than 1,000 views. For RMySQL, for loop problem...

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