## User: Jake Wagner

Jake Wagner40
Reputation:
40
Status:
New User
Location:
Last seen:
4 days, 12 hours ago
Joined:
2 months, 4 weeks ago
Email:
j*******@fredhutch.org

#### Posts by Jake Wagner

<prev • 7 results • page 1 of 1 • next >
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... Mike re-opened an issue related to this: https://github.com/RGLab/flowCore/issues/23. I'll be moving the classes and methods that necessitate these dependencies over to flowStats and I'll post here and to that issue when that's complete. ...
written 4 days ago by Jake Wagner40
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... Additionally, I went ahead and added an inverse.transform flag to getData in https://github.com/RGLab/flowWorkspace/commit/0346da50b5e876ac90465a4ecdc3aa71589b7778 Those changes will be in the Bioconductor 3.10 development branch as well and will make this a bit easier:  fs_inverted <- get ...
written 11 days ago by Jake Wagner40
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... Would getTransformations() with inverse=TRUE work for your case? So something along these lines:  fs_transformed <- getData(gs) inv_trans <- lapply(gs, function(gh){ invs <- getTransformations(gh, inverse=TRUE) invs <- transformList(names(invs), invs) }) fs_inverted <- tran ...
written 12 days ago by Jake Wagner40
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... Moved comment to answer ...
written 12 days ago by Jake Wagner40
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... No problem. Hervé Pagès was kind enough to move the toTable generic to BiocGenerics to remove the masking issue from AnnotationDBI, so in the next release this shouldn't be a problem. ...
written 11 weeks ago by Jake Wagner40
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... After carefully checking your session, I can reproduce your error. So it looks like attaching geneplotter is attaching annotate, which is attaching AnnotationDbi, which is masking flowCore::toTable(). I'll look in to the clash, but for now you can just explicitly ask for toTable from the  ...
written 12 weeks ago by Jake Wagner40
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... Your reproducible example seems incomplete, as curv.filter` was never defined. I assume by "code contained in the documentation for the function", you mean effectively this: dat <- read.FCS(system.file("extdata","0877408774.B08",package="flowCore")) c1f <- curv1Filter(filterId="myCur ...
written 12 weeks ago by Jake Wagner40

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