User: julien.sylvestre@wotan.ens.fr

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Posts by julien.sylvestre@wotan.ens.fr

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Re: Bioconductor digest, Vol 1 #69 - 4 msgs
... Hi, I had the same kind of problem and fixed it with : memory.limit(size = 15000); (for 15 GO) If you have enough HD space available, this should work. Cheers, Julien. >Message: 4 >From: "Castel, David" >To: "'bioconductor@stat.math.ethz.ch'" >Date: Mon, 1 Jul 2002 11:45:43 -0400 ...
normalization affy written 15.4 years ago by julien.sylvestre@wotan.ens.fr50
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affy cel + cdf files content
... This message is not directly related to Bioconductor yet I hope it might be of general interest for users... The first line of an Affymetrix Yg_s98 yeast chip .cel file looks like this X Y MEAN STDV NPIXELS 0 0 232 45 36 I read about 100 pixels were used where ...
yeast cdf probe written 15.4 years ago by julien.sylvestre@wotan.ens.fr50
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Probe pairs location on chips // ANOVA
... Hi, * Does anyone knows whether the probe pairs for a single probe set are distributed around the array on HgU95 human chips and on YgS98 yeast chips ? I heard affy recently decided to separate them in order to "average" spacial effects but in the case of yeast chips looking at the images makes me ...
yeast ygs98 probe affy written 15.6 years ago by julien.sylvestre@wotan.ens.fr50 • updated 15.6 years ago by Byron Ellis280
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(1) Anova for 12 Affy yeast chips (Yg98) // (2) Problem fitting Li&Wong model with Affy 1.0 :
... (1) Anova for 12 Affy yeast chips (Yg98) I'm going to try to explain the problem in a better way. I have the following experimental design : Fraction 1 Fraction 2 Medium A Fraction 3 * Medium B * 2 Reps - Fractions 1, 2 and 3 are three distinct subcell ...
go yeast cdf genefilter affy process written 15.6 years ago by julien.sylvestre@wotan.ens.fr50
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pb using affy // Anova with R
... * I've been using the affy package for a few days, and found it very well made, and really useful. By the way, thanks to all of yours for building a well documented and coherent software collection, which remains somewhat rare in the microarray domain, everyone tending to write it's own little progr ...
microarray yeast affy written 15.6 years ago by julien.sylvestre@wotan.ens.fr50

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