User: Leo K

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Leo K0
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Posts by Leo K

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Comment: A: txi <- tximport(files, type="salmon", tx2gene=tx2gene) Error in tximport(files,
... Thank you very much for your detailed replies and help! Perhaps I should have explained the initial situation more extensively to prevent misunderstanding. 1. The files I have been using and I am using momentarily are quant.sf-files, which are generated by salmon. The "quant" at the end of the dir ...
written 6 weeks ago by Leo K0
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Comment: C: txi <- tximport(files, type="salmon", tx2gene=tx2gene) Error in tximport(files,
... Thank you for your quick reply and your help! I deleted the ERRXXXXXX directories and replaced them with xx1/2/3 etc.. directories (renamed; in this case "G2_NULL_6h_IIRep_S9_R1_001.fastq.gz“quant“) containing quant.sf files. > dirs <- dir(paste0(path.package("tximportData"), "/extdata/sa ...
written 7 weeks ago by Leo K0 • updated 7 weeks ago by Martin Morgan ♦♦ 23k
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Comment: C: txi <- tximport(files, type="salmon", tx2gene=tx2gene) Error in tximport(files,
... Additional information: When I type in "files", it gives me the correct files: files sample1 "/Library/Frameworks/R.framework/Versions/3.5/Resources/library/tximportData/extdata/salmo ...
written 7 weeks ago by Leo K0
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txi <- tximport(files, type="salmon", tx2gene=tx2gene) Error in tximport(files, type = "salmon", tx2gene = tx2gene) : all(file.exists(files)) is not TRUE
... Hello, I am struggling to solve the following problem while trying to analyze my RNASeq data with DESeq2. When trying to import files via tximport, I get the following error: ``` txi <- tximport(files, type="salmon", tx2gene=tx2gene) Error in tximport(files, type = "salmon", tx2gene = tx2gene) ...
deseq2 tximport files file.path file.exists written 7 weeks ago by Leo K0

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