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Posts by eggrandio
... Wow! thank you so much for your help! it worked perfectly! ...
... Hi, I am doing an analysis of transcription factor binding and I need to retrieve the promoter region of all the genes in the genome. I can obtain 2kb upstream easily from a TxDB object by: library(GenomicRanges) library(TxDb.Athaliana.BioMart.plantsmart28) gnflanks = flank(genes(TxDb. ...
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