User: eggrandio

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eggrandio0
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Posts by eggrandio

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Comment: C: Obtain coordinates of 5' upstream region up to closest coding region
... Wow! thank you so much for your help! it worked perfectly! ...
written 4 weeks ago by eggrandio0
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Obtain coordinates of 5' upstream region up to closest coding region
... Hi, I am doing an analysis of transcription factor binding and I need to retrieve the promoter region of all the genes in the genome. I can obtain 2kb upstream easily from a TxDB object by: library(GenomicRanges) library(TxDb.Athaliana.BioMart.plantsmart28) gnflanks = flank(genes(TxDb. ...
granges R promoter written 6 weeks ago by eggrandio0 • updated 6 weeks ago by Hervé Pagès ♦♦ 13k

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