User: laurenz.holcik

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Posts by laurenz.holcik

<prev • 7 results • page 1 of 1 • next >
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Comment: C: 'biomaRt expected a character string of length 1' error with getBM and reseq mrn
... Solved it, thank you! ...
written 27 days ago by laurenz.holcik0
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'biomaRt expected a character string of length 1' error with getBM and reseq mrna filer
... Hi all, I am currently trying to convert the Illumina Human Methylation 450k annotation from the provided RefSeq IDs to ensembl gene IDs (if anybody has done this before and could give the the files that would be perfect!). So when I use biomaRt to get the ensembl IDs of the ~20000 mRNA RefSeq IDs ...
biomart written 27 days ago by laurenz.holcik0 • updated 27 days ago by Mike Smith3.7k
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Comment: C: Illumina Methylation 27k minfi
... Perfect, thank you!! ...
written 3 months ago by laurenz.holcik0
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Comment: C: Illumina Methylation 27k minfi
... Oh okay, thank you!! ...
written 3 months ago by laurenz.holcik0
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Answer: A: Reading 450k data in minfi
... I had to create the sample sheet myself today because my data came without it and I realized that in my case the read function did actually not use the Basename column but inferred the filenames by pasting slide + "_" + array together and then + "_Red"/"Grn". So without those 2 columns which should ...
written 3 months ago by laurenz.holcik0
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Comment: C: Reading 450k data in minfi
... I had to create the sample sheet myself today because my data came without it and I realized that in my case the read function did actually not use the Basename column but inferred the filenames by pasting slide + "_" + array together and then + "Red"/"Grn". So without those 2 columns which should b ...
written 3 months ago by laurenz.holcik0
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Illumina Methylation 27k minfi
... Hello, I am trying to analyze methylationdata from TCGA Illumina 27k methylation arrays. I am using read.metharray from minfi to import the data and it creates a RGChannesSet: > rgSet27 class: RGChannelSet dim: 55300 295 metadata(0): assays(2): Green Red rownames(55300 ...
microarray minfi methylation illumina27k written 3 months ago by laurenz.holcik0 • updated 3 months ago by Kasper Daniel Hansen6.4k

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