User: laurenz.holcik

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Posts by laurenz.holcik

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Comment: C: Illumina Methylation 27k minfi
... Perfect, thank you!! ...
written 5 weeks ago by laurenz.holcik0
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Comment: C: Illumina Methylation 27k minfi
... Oh okay, thank you!! ...
written 5 weeks ago by laurenz.holcik0
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Answer: A: Reading 450k data in minfi
... I had to create the sample sheet myself today because my data came without it and I realized that in my case the read function did actually not use the Basename column but inferred the filenames by pasting slide + "_" + array together and then + "_Red"/"Grn". So without those 2 columns which should ...
written 6 weeks ago by laurenz.holcik0
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Comment: C: Reading 450k data in minfi
... I had to create the sample sheet myself today because my data came without it and I realized that in my case the read function did actually not use the Basename column but inferred the filenames by pasting slide + "_" + array together and then + "Red"/"Grn". So without those 2 columns which should b ...
written 6 weeks ago by laurenz.holcik0
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Illumina Methylation 27k minfi
... Hello, I am trying to analyze methylationdata from TCGA Illumina 27k methylation arrays. I am using read.metharray from minfi to import the data and it creates a RGChannesSet: > rgSet27 class: RGChannelSet dim: 55300 295 metadata(0): assays(2): Green Red rownames(55300 ...
microarray minfi methylation illumina27k written 6 weeks ago by laurenz.holcik0 • updated 6 weeks ago by Kasper Daniel Hansen6.4k

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