User: cihan.erkut

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cihan.erkut10
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Location:
German Cancer Research Center, Heidelberg, Germany
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2 days, 19 hours ago
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9 months, 1 week ago
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c**********@nct-heidelberg.de

Posts by cihan.erkut

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Comment: C: batch correction in DESeq2 > matrix not full rank > mitigate
... Perhaps you can try [surrogate variable analysis][1]? [1]: http://bioconductor.org/packages/release/bioc/html/sva.html ...
written 21 days ago by cihan.erkut10
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Significance of the interaction term in DESeq2
... Hi everyone, I’m using DESeq2 to analyze RNA-Seq data. I have basically 2 factors: Genotype and Treatment. I build the design matrix as ~ Genotype * Treatment to capture interaction effects (Genotype:Treatment) as well. After correctly releveling the factors, I get the coefficients that I want. So ...
deseq2 written 9 months ago by cihan.erkut10 • updated 9 months ago by Michael Love26k

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