User: baldissera152

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Posts by baldissera152

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Scran: Performing DE after cell-typle identifaction on the corrected and integrated datasets
... Hi, community. I am working with two drop-seq datasets that I would like to integrate using MNN_correct and then perform DE, reproducing the method presented in the [MNN paper][1]. I would appreciate your opinion on my rationale. I have processed both datasets and then corrected using mnn_correct. ...
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Independent dataset comparison, design definition and average of contrasts in Deseq2
... Hello, guys. I am working with scRNA-Seq and I would appreciate your opinion and expertise on my analysis rationale and design. I've processed two independent single-cell GSEs, I've merged both datasets using the mutual-nearest neighbors method (MNNcorrect-Scran) and identified the interest cell-ty ...
deseq2 design definition average of contrasts singe-cell written 5 months ago by baldissera1520 • updated 5 months ago by Michael Love24k

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