User: anmej

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anmej0
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Posts by anmej

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Answer: A: How to make combined annotation of 5'UTRs and CDS's?
... I found the answer, and it is embarrassingly simple. Somehow I failed to notice the existence of pair-wise set functions. fiveUTRCDS = pc(fiveUTRs, cds) fiveUTRCDS = reduce(fiveUTRCDS) ...
written 4 weeks ago by anmej0
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How to make combined annotation of 5'UTRs and CDS's?
... Hello everyone. I want to extract the annotation of 5UTR+CDS region of every transcript in the hg19 annotation, to search for alternative ORFs. This is what I've managed to do so far: txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene fiveUTRs = fiveUTRsByTranscript(txdb, use.names = TRUE) ...
annotation genomicranges grangeslist concatenation written 4 weeks ago by anmej0

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