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Posts by filippo.martignano
... Hello. I'm dealing with a particular design: Basically I am looking if DNA alterations (in particular focal CNV) affect somehow gene expression. The idea is to look if the deletion of a gene (or a portion of a gene) leads to disregulation of its expression, and I would like to use Deseq2. I made a ...
... Hi! I've performed Cox PH regression analysis using variance stabilized counts (produced with VST from Deseq2) obtained with salmon (at the transcript level) as suggested in this post https://support.bioconductor.org/p/103464/. Now, I would like to perform the same analysis at the gene level; acco ...
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