User: aurel.nagy

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aurel.nagy10
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featureCounts for ATAC-seq
... I'm trying to count paired end ATAC-seq alignments that fall within peaks specified by a BED file for differential accessibility analyses across two conditions. Peaks were called using `MACS2` with `--shift -75 --extsize 150 --nomodel --keep-dup all --SPMR`, to center reads around sites of transposa ...
featurecounts atac subread written 3 months ago by aurel.nagy10 • updated 3 months ago by Wei Shi3.1k

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