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Posts by Aspie96
... This problem can occour when the chromosome names are not the same in the BAM files and in the GFF/GTF file. This is for instance possible if they come from different sources. If you are unable to get them from the same source, you should check the chrAliases option. However, setting it may not be ...
... Hi, Raito. First, you should call: buildindex(basename = "index", reference="./Data.fna") This generate the needed index files and the input must be in FASTA format. We will need these files later. The basename parameter ("index") indicates the prefix of the files. Then, you call: fastq ...
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