User: ravisaroch

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Posts by ravisaroch

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Annotation of Rice Affymatrix Data
... I notice that this will work on dataset which contain feature data, but feature data is absent in my case. How i can proceed further. ``` COMBAT_man_filtered ExpressionSet (storageMode: lockedEnvironment) assayData: 29351 features, 89 samples element names: exprs protocolData: none phenoData sam ...
written 5 months ago by ravisaroch0 • updated 5 months ago by James W. MacDonald51k
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Answer: A: Minimum number of samples per treatment/group for WGCNA analysis
... Minimum 15-15 samples are required in both the cases (treatment as well as in control). ...
written 5 months ago by ravisaroch0
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Comment: C: Error: Bioconductor version '3.8' requires R version '3.5'
... biocLite is used for the R older version of R (<3.5). ...
written 5 months ago by ravisaroch0
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Removal of noise creating eigengenes and eigenarrays from the Dataset
... I have a merged data (rice) set of 9 microarray GSE series having same platform i.e GPL2025. How to remove noise creating eigengenes and eigenarray from the dataset. ...
limma rice eigengenes biosvd written 5 months ago by ravisaroch0
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Comment: C: Annotation of Rice Affymatrix Data
... I will take care for this. Thanks a lot for your kind support. ...
written 5 months ago by ravisaroch0
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Comment: C: Annotation of Rice Affymatrix Data
... As per suggestion tag was removed. microarray data of series GPL2025. RMA methos is use to normalized the each single affybatch and then 9 datasets (affyBatch ) are merged by COMBAT batch correction Method. ...
written 5 months ago by ravisaroch0

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