User: researcher

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researcher0
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Posts by researcher

<prev • 10 results • page 1 of 1 • next >
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Can we change the name of the ColAttributes in the image generated by dba.plotHeatmap?
... Hi, Can we change the name of the ColAttributes in the image generated by dba.plotHeatmap? As I have two attributes in my data `DBA_CONDITION`, `DBA_FACTOR` but want to name "Factors" as "Histone Mark" in the figure generated by `plot()` or `dba.plotHeatmap()`. Is it possible to do so? Thanks. ...
diffbind plot dba.plotheatmap plotheatmap written 3 hours ago by researcher0 • updated 3 hours ago by Martin Morgan ♦♦ 23k
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Comment: C: Can we control colors for two different colAtributes
... Hi **@Rory**, thank you so much for your great help. Does the **colSideCols** also make sure that there should not be an overlap of colors between DBA_TISSUE and DBA_CONDITION? In my additional question, I want to ask how can we add the definition of each color in the legend to show which color r ...
written 2 days ago by researcher0
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Can we control colors for two different colAtributes
... How can I control colors for different colAttributes: one as Factor and other is Condition. Can I use different colors for these two cola attributes? Additionally, How can I have the color annotation for each factor and condition. Kindly help. Thanks! ...
diffbind plot plotheatmap written 2 days ago by researcher0 • updated 2 days ago by Rory Stark2.8k
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Comment: C: How can I remove the row and column labels/names in the plot() or dba.plotHeatma
... Thanks**@Rory** for answering, it really helped. I have another question how can I control colors for colAttributes as I have one as Factor and other as Condition. Can I use different colors for these two? Additionally, How can I have the color annotation for each factor and condition. Kindly help. ...
written 2 days ago by researcher0
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Comment: C: How can I remove the row and column labels/names in the plot() or dba.plotHeatma
... Dear Ramrs, I have made the suggested changes to my post. DiffBind do have dba.plotHeatmap() or just plot() to plot correlation matrix which uses heatmap.3 in background as mentioned in the source code [core.R][1] I hope this will be helpful in seeking your help. **@Rory Stark** , can you please ...
written 3 days ago by researcher0
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How can I remove the row and column labels/names in the plot() or dba.plotHeatmap() while plotting correlation matrix using diffbind?
... Hi I am using DiffBind's dba.plotHeatmap() or just plot() to plot a correlation matrix between the peak calls. For my correlation matrix I don't want to have the axis labels and thus used the given command plot(DBdata,labRow = NULL, labCol = NULL) but getting the following error: Error ...
diffbind plot heatmap.3 written 3 days ago by researcher0 • updated 3 days ago by Rory Stark2.8k
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How can we increase the width of the correlation plot generated by DiffBind
... In order to accommodate the whole list of samples on the plot, how can I increase the width of the correlation plot generated by DiffBind ...
diffbind plot(dbdata) written 5 weeks ago by researcher0 • updated 3 days ago by Rory Stark2.8k
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[read.metharray] Trying to parse different IDAT files, of different size and type.
... Hi All, I am trying to analyze methylation data from 3 different runs (a mix of 450K and 2 different versions of EPIC array) together. Even after using "force=TRUE" with read.metharray.exp() but getting the following error: ``` Error in read.metharray(basenames = files, extended = extended, verbos ...
limma minfi written 9 weeks ago by researcher0 • updated 9 weeks ago by Gordon Smyth38k
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Comment: C: generate RangedData from DiffBind
... Hi @GordBrown How can I modify these lines of code to get my annotation in terms of HGNC ...
written 3 months ago by researcher0
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minfi error in read.metharray
... I am getting following error related to read.metharray, while running my Script, ``` Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : !anyDuplicated(basenames) is not TRUE ``` FYI, I made my sample sheet on my own by removing the information of some of the ...
minfi methylation idat samplesheet written 3 months ago by researcher0 • updated 9 weeks ago by Gordon Smyth38k

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