User: jamesfischer047

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Posts by jamesfischer047

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Comment: C: Deseq2 Multivariate Time Series: DEGs for each time point comparison?
... Thank you! For some reason, that message never popped up. But that was in fact the issue! ...
written 6 weeks ago by jamesfischer0470
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Comment: C: Deseq2 Multivariate Time Series: DEGs for each time point comparison?
... Thank you for the answer! Whenever I use resultsNames(), I get the same thing for my different tests (the different tests have different designs, as can be seen above). I get: [1] "Intercept" "stage" "treatX800" "stage.treatX800" In which "X800" represents my treatment ...
written 6 weeks ago by jamesfischer0470
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Deseq2 Multivariate Time Series: DEGs for each time point comparison?
... Hi all, I have a set of RNA-seq data. It's a time series with 4 stages of leaf development, 2 treatments, and 3 bio-reps per stage x treat combo. I've already found DEGs for the treatments, and DEGs for the stage:treatment interaction, but what I would like to do is find DEGs at each stage comparis ...
deseq2 rna-seq written 6 weeks ago by jamesfischer0470 • updated 6 weeks ago by Michael Love24k

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