User: madhu93

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madhu930
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Posts by madhu93

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Comment: C: edgeR and batch effect correction for differential analysis
... Sure. So I guess the design matrix I gave above is the right one where I included batch effect. Thanks a lot James ...
written 5 months ago by madhu930
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Comment: C: edgeR and batch effect correction for differential analysis
... Yes I understand now. Thanks a lot Mikhael. ...
written 5 months ago by madhu930
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edgeR and batch effect correction for differential analysis
... I have seen many posts about batch effect correction on RNA-seq data. But I'm little confused in using the code for differential analysis. So, asking it here. I have been using 8 rna-seq samples, 4 NOTCH silenced samples and 4 Controls. The setup is like this Samples type days 1 ...
rnaseq batcheffect limma edger R written 5 months ago by madhu930 • updated 5 months ago by James W. MacDonald51k

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