User: s.nielsen

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s.nielsen20
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20
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New User
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Last seen:
3 months ago
Joined:
5 months, 1 week ago
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s********@lancaster.ac.uk

Posts by s.nielsen

<prev • 5 results • page 1 of 1 • next >
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Comment: C: BiomaRt and phytozome
... Hey Mike, Sorry for the delay in response, but yes it is all working nicely now on Windows! Thank you greatly for your fast response and fixing of this. This will make my life much easier. ...
written 3 months ago by s.nielsen20
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Comment: C: BiomaRt and phytozome
... Hey Mike, So I'm following this up again. It turns out that there are issues with doing this on windows but not on mac (for me at least with all my troubleshooting). It is related to the RCurl SSL version on windows vs mac; ### Win >RCurl::curlVersion()$ssl_version [1] "OpenSSL/1.0.0o" ### Ma ...
written 4 months ago by s.nielsen20
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Comment: C: BiomaRt and phytozome
... So with port 433, the web link works.. But through R it does not; > library(RCurl) > getURL('https://phytozome.jgi.doe.gov:443/biomart/martservice?type=registry&requestid=biomaRt') Error in function (type, msg, asError = TRUE) : error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tl ...
written 5 months ago by s.nielsen20
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Comment: C: BiomaRt and phytozome
... I think there may be a network issue at play here? I still have the error. I'm currently at my university. I may try at home and see what happens. ...
written 5 months ago by s.nielsen20
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BiomaRt and phytozome
... Any idea how to connect to phytozome through biomart? It seems to be an Rcurl problem when digging into the biomaRt code. Specifically, getURL. Something to do with SSL certificates? > library(biomaRt) > library(RCurl) > phyto <- "https://phytozome.jgi.doe.gov" > listMarts(host = phy ...
biomart rcurl phytozome written 5 months ago by s.nielsen20 • updated 5 months ago by Mike Smith4.0k

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