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Posts by dsilencio
Comment: C: cn.mops on CRAM files
... Thank you all. I will convert to .bam for the time being. Out of curitosity, is it possible to merge the GRanges objects containing count matrices generated from getReadCountsFromBAM? I would like to batch my files, but might be nice to run the cn.mops analysis on a combined dataset. ...
... Hello, I have several hundred .cram files that I would like to analyze with cn.mops and would like to avoid converting to a .bam intermediate. Does anyone have experience using .cram as input or using an alternative tool to generate read count matricies from .cram files? Thanks! ...
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