User: pgugger

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pgugger20
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Posts by pgugger

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Answer: A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
... In case others encounter the same problem, Monther's workaround strategy worked for me, but I made a few small updates and corrections: ``` problematic_pathways <- c("Retrograde endocannabinoid signaling", "Apoptosis - multiple species") #c("mmu04723", "mmu04215") sel = which(names(gs.annots[["ke ...
written 22 days ago by pgugger20
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Comment: C: EGSEA error during report generation: "only 0's may be mixed with negative subsc
... Hi Monther, Thank you for your helpful response. I reran my command with ```verbose = TRUE``` and copied the result below. From past experience, I have had problems with mmu04723 ("Retrograde endocannabinoid signaling"), which seems to be the culprit in this case too. In another data set I am analyz ...
written 22 days ago by pgugger20
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EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
... Hi, I am getting the error below ("only 0's may be mixed with negative subscripts") on certain data sets during the report generation stage when running EGSEA. I believe it has to do with plotting certain KEGG pathways in pathview, as others have reported here: https://github.com/lgeistlinger/Enrich ...
egsea written 25 days ago by pgugger20

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