User: Tima Karginov

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Posts by Tima Karginov

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Comment: C: Combining counts from non-replicate samples in RNA-Seq analysis for a synergisti
... Aaron, Thanks for your detailed and helpful response; it seems my design matrix was not set up correctly to create a contrast by adding 2 different groups, but it’s resolved now. Looking at my results, it appears my initial “manual” work-around combination of counts (adding SKO1/SKO2 and DKO/WT col ...
written 5 months ago by Tima Karginov0
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Combining counts from non-replicate samples in RNA-Seq analysis for a synergistic system
... I am working with an RNA-seq dataset where we're looking at the potential synergistic effects of two genes (by definition, the output in a synergistic system suggests that the two genes, when acting together as proteins on the same cell, will have a greater effect than the sum of their individual ef ...
normalization edger counts rna-seq written 5 months ago by Tima Karginov0 • updated 5 months ago by Aaron Lun25k

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