User: m93

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m9310
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5 months ago
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5 months, 1 week ago
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Posts by m93

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Comment: C: Best alternative annotation package to BiomaRt
... Thanks, I ended up using your solution and indeed it is much much faster to not have a specific query. Thanks! ...
written 5 months ago by m9310
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Comment: C: Best alternative annotation package to BiomaRt
... That's weird, somehow this works now. Before, O was querying a specific subset with the getBM() function but when I didn't query a specific subset like above, it worked somehow.. But I am no longer getting the usual message: Batch submitting query [=======>--------------------------------------- ...
written 5 months ago by m9310
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Best alternative annotation package to BiomaRt
... I have developing an RNA-seq pipeline and one of the steps of this is to annotation my genes. I am using Ensembl IDs and I would like my query to return me "ensembl_gene_id", "hgnc_id", "hgnc_symbol","description". Indeed, I need this information for later performing Gene set enrichment analysis. I ...
rnaseq biomart R ensembl written 5 months ago by m9310
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Comment: C: BioMart webservices broken?
... I still get the same error as James W. MacDonald. Is there any other potential reason why I could be getting this error? Is there a filesize (number of rows) limit perhaps? I am having the same issue as James W. MacDonald. My command was working for months and my query would take 1-2min to run. B ...
written 5 months ago by m9310

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