User: jason.williams

Reputation:
0
Status:
New User
Last seen:
7 hours ago
Joined:
3 months, 2 weeks ago
Email:
j*************@swansea.ac.uk

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by jason.williams

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answer
31
views
1
answers
Comment: C: Cannot put file path in for bam file when attempting to construct a TDS in trans
... Hi James, Thanks for your help. Here's the whole code from the r markdown I started to make. title: "trasncriptR" author: "Jason" date: "17/10/2019" output: html_document --- ```{r download transcriptR} if (!requireNamespace("BiocManager", quietly=TRUE))+ ins ...
written 7 hours ago by jason.williams0 • updated 7 hours ago by Martin Morgan ♦♦ 23k
0
votes
1
answer
31
views
1
answer
Cannot put file path in for bam file when attempting to construct a TDS in transcriptR
... Hi, I am following this vignette to use transcriptR to combine RNASeq and ChIPSeq data. https://bioconductor.org/packages/release/bioc/vignettes/transcriptR/inst/doc/transcriptR.pdf Unfortunately I'm falling at the first hurdle - as when I am trying to insert the path to bam file for my RNASeq f ...
transcriptr written 6 days ago by jason.williams0 • updated 6 days ago by James W. MacDonald51k
0
votes
1
answer
993
views
1
answers
Comment: C: Using tximport on rsem files produces error while trying to read in files
... Hi ,I have this length(files) > 0 is not TRUE. I don't understand this last response. I paste my code here, could you let me know if you have any idea how to fix this: ``` if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("tximport") lib ...
written 6 weeks ago by jason.williams0 • updated 6 weeks ago by Michael Love25k
0
votes
2
answers
1.9k
views
2
answers
Comment: C: unknown error in DiffBind package
... HI both, I have the same problem as Roberta. My bam.bai files are in the same folder as my bam alignments. I ran the following script: library("DiffBind") # read csv of sample sheet into dataframe samples <-read.csv(Extreme_Phenotype_H3K27Ac.csv) samples # Load and read the sample sheet DBdata ...
written 3 months ago by jason.williams0
2
votes
1
answer
107
views
1
answer
> DBdata <-dba(sampleSheet = samples) Error: object of type 'closure' is not subsettable
... Hi, I am using this vignette to guide me through differential ChIPSeq analysis - https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2018/ChIP/Practicals/Practical4_differentialBinding_DB.html Using this sample sheet in a .csv file ``` SampleID Tissue Factor Condition Treatmen ...
diffbind R r studio written 3 months ago by jason.williams0 • updated 3 months ago by James W. MacDonald51k

Latest awards to jason.williams

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 405 users visited in the last hour