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Posts by zhigang.li
... Thanks a lot for your help. I tried estimateSizeFactors() and changed the code a little bit. Now it is working. Here is my new code for the analysis. Does it look correct to you? Thanks! # run analysis suppressWarnings(runDeseq<- try(DESeq(dds, quiet = TRUE), silent = TRUE)) if (inherits(r ...
... Hi There, I am trying to do a differential abundance analysis with microbiome sequencing data suing DESeq2 package, but I keep getting errors after trying different approaches within the package. The data is a 50 by 501 matrix with each row being a sample and the first column being the group indica ...
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