User: haris.khan

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haris.khan10
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Germany/Munich/LMU
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2 months, 1 week ago
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2 months, 4 weeks ago
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h*********@bmc.med.lmu.de

Posts by haris.khan

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Comment: C: Imputation of mass spec MAR and MNAR missing values with proDA
... My only concern was that I know that there is a batch effect in the dataset. That's why I wanted to take the completed matrix, correct for the batch effect and then run a statistical test. Or would you suggest another method of dealing with this that is more compatible with proDA? Also, I just saw ...
written 12 weeks ago by haris.khan10
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Comment: C: Imputation of mass spec MAR and MNAR missing values with proDA
... I think I was not able to fully comprehend the paper on proDA so the question: Is it possible to just get a 'imputed' matrix out of the proDA function object? For eg. if I want to test pairwise comparisons using other approaches? ...
written 12 weeks ago by haris.khan10
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Imputation of mass spec MAR and MNAR missing values with proDA
... I have a 3-condition, 4-timepoint, 3-replicates model and data that is whole proteomics mass spectrometry. My data (normalized LFQ values) contains missing values that are both Missing At Random (MAR) and Missing Not At Random (MNAR). I am sure of this because a lot of proteins have missing values o ...
imputation mass spec proda mnar mar written 12 weeks ago by haris.khan10 • updated 12 weeks ago by James W. MacDonald51k

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