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Posts by fangpingmu
... It seems that shiftGAlignmentsList cannot handle bam files aligned by bwa. all(elementNROWS(gal) < 3) is not TRUE I generated the bam files using bowtie2, and the problems are solved. ...
... I got exact the same errors for mouse data. ATACSeqQC is version 1.8.1. I confirmed that my bam file exist and all parameters are OK. It seems that readBamFile does not work for bam files mapped on UCSC mm10 genome. Are there mouse bam files that I can test to run ATACSeqQC? > library(Rsamt ...
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