User: trumbia

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trumbia0
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Posts by trumbia

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Comment: C: EnsemblGene ID conversion
... It does not work for this bacteria. Do you know anything about pseudomonas aureus to convert ensembly gene id? Also id s like EOT21830. Thanks ...
written 8 weeks ago by trumbia0
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Comment: C: EnsemblGene ID conversion
... my organism is Ruminococcus bromii. Do you know any library about it? ...
written 9 weeks ago by trumbia0
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EnsemblGene ID conversion
... Hello; I have some IDs my result of DESeq2 however I do not know what are they also want to convert them to ensembl gene id. Is there any package to check what are they and convert them to ensemblygene id ? Thanks CBL14485 CBL14486 CBL14487 CBL14488 CBL14489 CBL14490 CBL14491 CBL14492 CBL14493 T ...
annotation deseq2 tutorial written 9 weeks ago by trumbia0 • updated 9 weeks ago by Martin Morgan ♦♦ 23k
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Comment: C: EdgeR mistake- dispersion
... I am not a university student at all. I was curious about this data and wanted to analyse it. If I had option to ask someone I knew, I d do this . Could you explain me how should I correct this? Thanks ...
written 10 weeks ago by trumbia0
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Comment: C: EdgeR mistake- dispersion
... I have 2 different replica for group example also I wanted to see if there is a difference between those group. That s why I consider them Blue1 and blue. ``` group lib.size norm.factors lane LMNOPRSTU1 Blue 783363 1 LB1 LMNOPRSTU2 Blue1 797764 1 LB1 L ...
written 10 weeks ago by trumbia0 • updated 10 weeks ago by Gordon Smyth38k
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EdgeR mistake- dispersion
... I am trying to conduct edgeR and Iam facing with 'Warning message: In estimateDisp.default(y = y$counts, design = design, group = group, : No residual df: setting dispersion to NA' mistake and my code is ``` files <- c("ABCDEFGHIJKLMNOPRSTU1.txt", "ABCDEFGHIJKLMNOPRSTU2.txt", "AB ...
edger written 11 weeks ago by trumbia0 • updated 10 weeks ago by Gordon Smyth38k
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Comment: C: DEseq2 ncol(countData) == nrow(colData) is not TRUE Error
... I can not debug this one. I guess i have problem about generating coldata but I still could not figure out ...
written 12 weeks ago by trumbia0
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DEseq2 ncol(countData) == nrow(colData) is not TRUE Error
... Hello' I have an error of ncol(countData) == nrow(colData) is not TRUE when I tried to set matrix. Code is below: countdata = read.table('k.txt', header=TRUE, sep = "\t", row.names = 1, as.is=TRUE) show(countdata) countdata <- as.matrix(countdata) head(countdata) condition <- factor(c ...
deseq2 written 12 weeks ago by trumbia0

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