User: neekonsu

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neekonsu0
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Posts by neekonsu

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Comment: C: TMM Normalization: DESeqDataSet: some values in assay are negative
... That is great to know, thanks for the speedy answer! The reason I was looking to mix both functions was because I am comparing pipelines, between EdgeR and DESeq(2), and I wanted to keep the normalization step constant in my comparison. However, since I was comparing for performance measure, I think ...
written 28 days ago by neekonsu0
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TMM Normalization: DESeqDataSet: some values in assay are negative
... Hi all, I am working with the publicly available RNA-seq data from the GTEx database at https://storage.googleapis.com/gtex_analysis_v7/rna_seq_data/GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_reads.gct.gz I have normalized the count data using EdgeR's calcNormFactors() and cpm(x, log=TRUE) fun ...
normalization deseq deseq2 written 28 days ago by neekonsu0 • updated 13 days ago by wunderl20

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