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Posts by neekonsu
... That is great to know, thanks for the speedy answer! The reason I was looking to mix both functions was because I am comparing pipelines, between EdgeR and DESeq(2), and I wanted to keep the normalization step constant in my comparison. However, since I was comparing for performance measure, I think ...
... Hi all, I am working with the publicly available RNA-seq data from the GTEx database at https://storage.googleapis.com/gtex_analysis_v7/rna_seq_data/GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_reads.gct.gz I have normalized the count data using EdgeR's calcNormFactors() and cpm(x, log=TRUE) fun ...
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