User: rensanhao

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rensanhao0
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Posts by rensanhao

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Comment: C: How to merge two tximport object into one dataset for DESeqDataSetFromTximport
... Thanks. I have some clues about this now. ...
written 4 months ago by rensanhao0
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Comment: C: How to merge two tximport object into one dataset for DESeqDataSetFromTximport
... I'm sorry but I didn't get it. According to vignette,I think the code files <- file.path(dir,"salmon", samples$run, "quant.sf.gz") names(files) <- samples$run is essential for labeling the group info, but I didn't fully understand how it works and moreover, it also led me to confuse ...
written 4 months ago by rensanhao0
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Comment: C: How to merge two tximport object into one dataset for DESeqDataSetFromTximport
... Thanks for this quick reply. So following this merged dataset, how to label which group is my control group or treated group? or should I add a column to label the salmon-quant.sf files before this integration? ...
written 4 months ago by rensanhao0
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Comment: C: How to merge two tximport object into one dataset for DESeqDataSetFromTximport
... Thanks for this quick reply. So following this merged dataset, how to label which group is my control group or treated group? or should I add a column to label the salmon-quant.sf files before this integration? ...
written 4 months ago by rensanhao0
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How to merge two tximport object into one dataset for DESeqDataSetFromTximport
... Hi, I created two the tximport object (untreated vs treated) from salmon,which is a S4 object has four cols name as abundance, counts, length, and countsfromabundance.My question is how to merge these two dataset into one so I could import them with using DESeqDataSetFromTximport? Thanks. ...
deseq2 tximport written 4 months ago by rensanhao0 • updated 4 months ago by Michael Love26k

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