User: sandraggava

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Posts by sandraggava

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Comment: C: design matrix for 4 groups in edgeR
... I want to compare the infected+treated group to the other 3 groups (untreated, infected, and treated). To search for DE genes unique for the treated+infected group. I look for genes that are differentially expressed in the group that I have both conditions simultaneously (Infection and treatment), t ...
written 3 months ago by sandraggava0
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Comment: C: design matrix for 4 groups in edgeR
... Dear Smyth, Thank you for your answer. When I tried to combine treatment and infection into one factor with four levels and used the infected+treated group as the contrast, the program returned that all genes were down-regulated. Follows the code I have used, if you kindly could help me. Am I wron ...
written 4 months ago by sandraggava0 • updated 4 months ago by Gordon Smyth39k
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design matrix for 4 groups in edgeR
... Hello, I have RNASeq data from 4 groups with 3 biological replicates. The conditions are: 1) untreated, 2) treated with a drug, 3)infected with a virus, and 4) treated and infected. I am looking for DE genes unique for the treated and infected group (condition 4). I am wondering which model is t ...
edger written 4 months ago by sandraggava0 • updated 4 months ago by Gordon Smyth39k

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