User: zhenfeng.liu1

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Posts by zhenfeng.liu1

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Integer overflow issue with ChIPQC
... I haven't figured out what's wrong, but when I reverted back to version 1.18.2, the error went away. ...
written 6 days ago by zhenfeng.liu110
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Answer: A: ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds in
... After some research, I think I've found the cause of this bug. In ChIPQC:::sampleQC function, there is code to check for read length with the first 1000 reads of the first chromosome. Code follows: if (k == 1) { tocheckforreads <- 1000 readlength = round(mean(width(temp[1:toc ...
written 6 days ago by zhenfeng.liu110
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Comment: C: ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds in
... I am running into the same error. Did you figure out the cause of the error? ...
written 6 days ago by zhenfeng.liu110
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Comment: C: Integer overflow issue with ChIPQC
... I have the exact same error. It's strange that some BAM file will work, but other will not. Did you figure out how to fix this? ...
written 10 days ago by zhenfeng.liu110
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Comment: C: ATAC-Seq peaks quality control with ChIPQC package, but getting error
... Got the same error. Any resolution? ...
written 10 days ago by zhenfeng.liu110

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